1. ABBA
Assembly Boosted By Amino acid sequence is a comparative gene assembler, which uses amino acid sequences from predicted proteins to help build a better assembly
标签:Genomic Assembly
2. QUAST
QUAST stands for QUality ASsessment Tool. It evaluates a quality of genome assemblies by computing various metrics and providing nice reports.
标签:Quality Control, Genomic Assembly Evaluation, Sequence analysis
3. Baa.pl
use transcripts to assess a de novo assembly
标签:Genomic Assembly Evaluation,Genomic Assembly Validation
4. FaBox
Tools for splitting, joining and otherwise manipulating FASTA format sequence files.
标签:Phylogenetics, Genomic Assembly
5. Spiral Genetics
Spiral Genetics provides a novel aligner/variant caller, Anchored Assembly, which can detect large structural variations using short read NGS data with unmatched precision.
标签:Alignment, DNA-Seq, Exome and Whole genome variant detection, De novo Assembly,Genomic Assembly, Mapping,Quality Control, Read alignment, Reference assembly,Resequencing, SNP discovery,Sequence analysis, Whole Genome Resequencing
6. ZORRO
ZORRO is an hybrid sequencing technology assembler. It takes to sets of pre-assembled contigs and merge them into a more contiguous and consistent assembly. The main caracteristic of Zorro is the treatment before and after assembly to avoid errors.
标签:Genomic Assembly, Genomics